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Burkholderia pseudomallei grown on sheep blood agar for 48 hours.

Pacific-Southwest RCE Publications 2006-

2006

Arndt, J.W., Chai, Q., Christian, T. and Stevens, R.C. (2006) Structure of botulinum neurotoxin type D light chain at 1.65 A resolution: repercussions for VAMP-2 substrate specificity. Biochemistry 45:3255-3262.
http://dx.doi.org/10.1021/bi052518r
http://pubs.acs.org/cgi-bin/abstract.cgi/bichaw/2006/45/i10/abs/bi052518r.html

Arndt, J.W., Jacobson, M.J., Abola, E.E., Forsyth, C.M., Tepp, W.H., Marks, J.D., Johnson, E.A. and Stevens, R.C. (2006) A structural perspective of the sequence variability within botulinum neurotoxin subtypes A1-A4. J Mol Biol. 362:733-742.
http://dx.doi.org/10.1016/j.jmb.2006.07.040

Baker, E.S., Hong, J.W., Gaylord, B.S., Bazan, G.C. and Bowers, M.T. (2006) PNA/dsDNA complexes: site specific binding and dsDNA biosensor applications. J Am Chem Soc. 128:8484-8492.
http://dx.doi.org/10.1021/ja060069s
http://pubs.acs.org/cgi-bin/abstract.cgi/jacsat/2006/128/i26/abs/ja060069s.html

Botten, J., Alexander, J., Pasquetto, V., Sidney, J., Barrowman, P., Ting, J., Peters, B., Southwood, S., Stewart, B., Rodriguez-Carreno, M.P., Mothe, B., Whitton, J.L., Sette, A. and Buchmeier, M.J. (2006) Identification of protective Lassa virus epitopes that are restricted by HLA-A2. J Virol. 80:8351-8361.
http://dx.doi.org/10.1128/JVI.00896-06
http://jvi.asm.org/cgi/content/full/80/17/8351?view=long&pmid=16912286

Brotcke, A., Weiss, D.S., Kim, C.C., Chain, P., Malfatti, S., Garcia, E. and Monack, D.M. (2006) Identification of MglA-regulated genes reveals novel virulence factors in Francisella tularensis. Infect Immun. 74:6642-6655. http://dx.doi.org/10.1128/IAI.01250-06
http://iai.asm.org/cgi/content/full/74/12/6642?view=long&pmid=17000729

Chai, Q., Arndt, J.W., Dong, M., Tepp, W.H., Johnson, E.A., Chapman, E.R. and Stevens, R.C. (2006) Structural basis of cell surface receptor recognition by botulinum neurotoxin B. Nature. 444:1096-1100. http://dx.doi.org/10.1038/nature05411
http://www.nature.com/nature/journal/v444/n7122/full/nature05411.html

Chan, P., Phan, T., Kao, M.C., Dolan, C. and Tok, J.B. (2006) Generating short peptidic ligands for silver nanowires from phage display random libraries. Bioorg Med Chem Lett. 16:5261-5264.
http://dx.doi.org/10.1016/j.bmcl.2006.08.013

Deardorff, E., Estrada-Franco, J., Brault, A.C., Navarro-Lopez, R., Campomanes-Cortes, A., Paz-Ramirez, P., Solis-Hernandez, M., Ramey, W.N., Davis, C.T., Beasley, D.W., Tesh, R.B., Barrett, A.D. and Weaver, S.C. (2006) Introductions of West Nile virus strains to Mexico. Emerg Infect Dis. 12:314-318.
http://www.cdc.gov/ncidod/EID/vol12no02/05-0871.htm

Lee, B.Y., Horwitz, M.A. and Clemens, D.L. (2006) Identification, recombinant expression, immunolocalization in macrophages, and T-cell responsiveness of the major extracellular proteins of Francisella tularensis. Infect Immun. 74:4002-4013.
http://dx.doi.org/10.1128/IAI.00257-06
http://iai.asm.org/cgi/content/full/74/7/4002?view=long&pmid=16790773

Reignier, T., Oldenburg, J., Noble, B., Lamb, E., Romanowski, V., Buchmeier, M.J. and Cannon, P.M. (2006) Receptor use by pathogenic arenaviruses. Virology. 353:111-120.
http://dx.doi.org/10.1016/j.virol.2006.05.018

Rojek, J.M., Spiropoulou, C.F. and Kunz, S. (2006) Characterization of the cellular receptors for the South American hemorrhagic fever viruses Junin, Guanarito, and Machupo. Virology. 349:476-491. http://dx.doi.org/10.1016/j.virol.2006.02.033

Tok, J.B.-H., Chuang, F.Y.S., Kao, M.C., Rose, K.A., Pannu, S.S., Sha, Y.S., Chakarova, G., Penn, S.G. and Doughterty, G.M. (2006) Metallic striped nanowires as multiplexed immunoassay platforms for pathogen detections. Angewandte Chemie International. 45:6900-6904.
http://dx.doi.org/10.1002/anie.200601104
http://www3.interscience.wiley.com/cgi-bin/fulltext/112747848/HTMLSTART

2007

Botten, J.W. and Kotturi, M.F. (2007) Adaptive immunity to Lymphocytic choriomeningitis virus: new insights into antigenic determinants. Future Virology. 2:495-508.
http://dx.doi.org/10.2217/17460794.2.5.495
http://www.futuremedicine.com/doi/abs/10.2217/17460794.2.5.495

Brault, A.C., Huang, C.Y., Langevin, S.A., Kinney, R.M., Bowen, R.A., Ramey, W.N., Panella, N.A., Holmes, E.C., Powers, A.M. and Miller, B.R. (2007) A single positively selected West Nile viral mutation confers increased virogenesis in American crows. Nat Genet. 39:1162-1166.
http://dx.doi.org/10.1038/ng2097

http://www.nature.com/ng/journal/v39/n9/full/ng2097.html

Brunger, A.T., Breidenbach, M.A., Jin, R., Fischer, A., Santos, J.S. and Montal, M. (2007) Botulinum neurotoxin heavy chain belt as an intramolecular chaperone for the light chain. PLoS Pathog. 3:1191-1194. http://dx.doi.org/10.1371/journal.ppat.0030113
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17907800

Capul, A.A., Perez, M., Burke, E., Kunz, S., Buchmeier, M.J. and de la Torre, J.C. (2007) Arenavirus Z-glycoprotein association requires Z myristoylation but not functional RING or late domains. J Virol. 81:9451-9460. http://dx.doi.org/10.1128/JVI.00499-07
http://jvi.asm.org/cgi/content/full/81/17/9451?view=long&pmid=17581989

Chen, M., Huang, B., Shin, E., Robinson, E., Pierstorff, E., Huang, H. and Ho, D. (2007) Engineering multifunctional biologically-amenable nanomaterials for interfacial therapeutic delivery and substrate-based cellular interrogation. Bioinformatics and Bioengineering, 2007. Ed(s): Huang, B. pg: 517-523.

Chow, E., Pierstorff, E., Genhong, C., Tai, Y.-C. and Dean, A. (2007) Attenuation of cellular inflammation using glucocorticoid-functionalized copolymers. IEEE Int. Conf. on Nano/Micro Engineered and Molecular Systems. Ed(s): Pierstorff, E. pg: 1039-1043.

Clemens, D.L. and Horwitz, M.A. (2007) Uptake and intracellular fate of Francisella tularensis in human macrophages. Ann N Y Acad Sci. 1105:160-186. http://dx.doi.org/10.1196/annals.1409.001 http://www.annalsnyas.org/cgi/content/abstract/1105/1/160

Fischer, A. and Montal, M. (2007) Crucial role of the disulfide bridge between botulinum neurotoxin light and heavy chains in protease translocation across membranes. J Biol Chem. 282:29604-29611. http://dx.doi.org/10.1074/jbc.M703619200
http://www.jbc.org/cgi/content/full/282/40/29604

Fischer, N.O., Tarasow, T.M. and Tok, J.B.-H. (2007) Aptasensors for biosecurity applications. Curr Opin Chem Biol. 11:316-328. http://dx.doi.org/10.1016/j.cbpa.2007.05.017

Garcia-Rodriguez, C., Levy, R., Arndt, J.W., Forsyth, C.M., Razai, A., Lou, J., Geren, I., Stevens, R.C. and Marks, J.D. (2007) Molecular evolution of antibody cross-reactivity for two subtypes of type A botulinum neurotoxin. Nat Biotechnol. 25:107-116. http://dx.doi.org/10.1038/nbt1269
http://www.nature.com/nbt/journal/v25/n1/full/nbt1269.html

Henry, T., Brotcke, A., Weiss, D.S., Thompson, L.J. and Monack, D.M. (2007) Type I interferon signaling is required for activation of the inflammasome during Francisella infection. J Exp Med. 204:987-994. http://dx.doi.org/10.1084/jem.20062665
http://www.jem.org/cgi/content/full/204/5/987

Huang, H., Pierstorff, E., Osawa, E. and Ho, D. (2007) Active nanodiamond hydrogels for chemotherapeutic delivery. Nano Lett. 7:3305-3314. http://pubs.acs.org/cgi-bin/article.cgi/nalefd/2007/7/i11/html/nl071521o.html

Huang, S., Schopf, E. and Chen, Y. (2007) Dynamically configurable biomolecular nanoarrays. Nano Lett. 7:3116-3121. http://dx.doi.org/10.1021/nl071643g
http://pubs.acs.org/cgi-bin/article.cgi/nalefd/2007/7/i10/html/nl071643g.html

Kotturi, M.F., Peters, B., Buendia-Laysa, F., Jr., Sidney, J., Oseroff, C., Botten, J., Grey, H., Buchmeier, M.J. and Sette, A. (2007) The CD8+ T-cell response to lymphocytic choriomeningitis virus involves the L antigen: uncovering new tricks for an old virus. J Virol. 81:4928-4940. http://dx.doi.org/10.1128/JVI.02632-06
http://jvi.asm.org/cgi/content/full/81/10/4928?view=long&pmid=17329346

Kyle, J.L., Beatty, P.R. and Harris, E. (2007) Dengue virus infects macrophages and dendritic cells in a mouse model of infection. J Infect Dis. 195:1808-1817. http://dx.doi.org/10.1086/518007 http://www.journals.uchicago.edu/doi/abs/10.1086/518007

Marshall, K.M., Bradshaw, M., Pellett, S. and Johnson, E.A. (2007) Plasmid encoded neurotoxin genes in Clostridium botulinum serotype A subtypes. Biochem Biophys Res Commun. 361:49-54. http://dx.doi.org/10.1016/j.bbrc.2007.06.166

Mothe, B.R., Stewart, B.S., Oseroff, C., Bui, H.H., Stogiera, S., Garcia, Z., Dow, C., Rodriguez-Carreno, M.P., Kotturi, M., Pasquetto, V., Botten, J., Crotty, S., Janssen, E., Buchmeier, M.J. and Sette, A. (2007) Chronic lymphocytic choriomeningitis virus infection actively down-regulates CD4+ T cell responses directed against a broad range of epitopes. J Immunol. 179:1058-1067.
http://www.jimmunol.org/cgi/content/full/179/2/1058

Oldenburg, J., Reignier, T., Flanagan, M.L., Hamilton, G.A. and Cannon, P.M. (2007) Differences in tropism and pH dependence for glycoproteins from the Clade B1 arenaviruses: implications for receptor usage and pathogenicity. Virology. 364:132-139. http://dx.doi.org/10.1016/j.virol.2007.03.003

Pearson, T., U'Ren, J.M., Schupp, J.M., Allan, G.J., Foster, P.G., Mayo, M.J., Gal, D., Choy, J.L., Daugherty, R.L., Kachur, S., Friedman, C.L., Leadem, B., Georgia, S., Hornstra, H., Vogler, A.J., Wagner, D.M., Keim, P. and Currie, B.J. (2007) VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infect Genet Evol. 7:416-423.
http://dx.doi.org/10.1016/j.meegid.2006.12.002

Pierstorff, E. and Ho, D. (2007) Monitoring, diagnostic, and therapeutic technologies for nanoscale medicine. J Nanoscience Nanotechnology. 7:2949-2968. http://dx.doi.org/10.1166/jnn.2007.893 http://www.ingentaconnect.com/content/asp/jnn/2007/00000007/00000009/art00001

Rohrbough, J.G., Galgiani, J.N. and Wysocki, V.H. (2007) The application of proteomic techniques to fungal protein identification and quantification. Ann N Y Acad Sci. 1111:133-146.
http://dx.doi.org/10.1196/annals.1406.034

http://www.annalsnyas.org/cgi/content/abstract/1111/1/133

Rojek, J.M., Campbell, K.P., Oldstone, M.B. and Kunz, S. (2007) Old World arenavirus infection interferes with the expression of functional alpha-dystroglycan in the host cell. Mol Biol Cell. 18:4493-4507. http://dx.doi.org/10.1091/mbc.E07-04-0374
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17761532

Rojek, J.M., Spiropoulou, C.F., Campbell, K.P. and Kunz, S. (2007) Old World and clade C New World arenaviruses mimic the molecular mechanism of receptor recognition used by alpha-dystroglycan's host-derived ligands. J Virol. 81:5685-5695. http://dx.doi.org/10.1128/JVI.02574-06
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17360738

Saunders, A.A., Ting, J.P., Meisner, J., Neuman, B.W., Perez, M., de la Torre, J.C. and Buchmeier, M.J. (2007) Mapping the landscape of the lymphocytic choriomeningitis virus stable signal peptide reveals novel functional domains. J Virol. 81:5649-5657. http://dx.doi.org/10.1128/JVI.02759-06
http://jvi.asm.org/cgi/content/full/81/11/5649?view=long&pmid=17376927

Tuanyok, A., Auerbach, R.K., Brettin, T.S., Bruce, D.C., Munk, A.C., Detter, J.C., Pearson, T., Hornstra, H., Sermswan, R.W., Wuthiekanun, V., Peacock, S.J., Currie, B.J., Keim, P. and Wagner, D.M. (2007) A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. J Bacteriol. 189:9044-9049. http://dx.doi.org/10.1128/JB.01264-07 http://jb.asm.org/cgi/content/abstract/189/24/9044

Weiss, D.S., Brotcke, A., Henry, T., Margolis, J.J., Chan, K. and Monack, D.M. (2007) In vivo negative selection screen identifies genes required for Francisella virulence. Proc Natl Acad Sci U S A. 104:6037-6042. http://dx.doi.org/10.1073/pnas.0609675104
http://www.pnas.org/cgi/content/full/104/14/6037

2008

Chow, E., Pierstorff, E., Cheng, G. and Ho, D. (2008) Copolymeric nanofilm platform for controlled and localized therapeutic delivery. ACS Nano. 2:33-40. http://dx.doi.org/10.1021/nn7000917
http://pubs.acs.org/cgi-bin/sample.cgi/ancac3/2008/2/i01/html/nn7000917.html

Fischer, A., Garcia-Rodriguez, C., Geren, I., Lou, J., Marks, J.D., Nakagawa, T. and Montal, M. (2008) Molecular architecture of botulinum neurotoxin e revealed by single particle electron microscopy. J Biol Chem. 283:3997-4003. http://dx.doi.org/10.1074/jbc.M707917200
http://www.jbc.org/cgi/content/full/283/7/3997

Fischer, N.O., Tarasow, T.M. and Tok, J.B. (2008) Protein detection via direct enzymatic amplification of short DNA aptamers. Anal Biochem. 373:121-128. http://dx.doi.org/10.1016/j.ab.2007.09.035

Flanagan, M.L., Oldenburg, J., Reignier, T., Holt, N., Hamilton, G.A., Martin, V.K. and Cannon, P.M. (2008) New world clade B arenaviruses can use transferrin receptor 1 (TfR1)-dependent and -independent entry pathways, and glycoproteins from human pathogenic strains are associated with the use of TfR1. J Virol. 82:938-948. http://dx.doi.org/10.1128/JVI.01397-07
http://jvi.asm.org/cgi/content/abstract/82/2/938

Gong, J. and Kim, C.-J. (2008) All-electronic droplet generation on-chip with real-time feedback control for EWOD digital microfluidics. Lab Chip. 8:In press. Huang, H., Pierstorff, E., Osawa, E. and Ho, D. (2008) Protein-mediated assembly of nanodiamond hydrogels into a biocompatible and biofunctional multilayer nanofilm. ACS Nano. http://dx.doi.org/10.1021/nn7000867
http://pubs3.acs.org/acs/journals/doilookup?in_doi=10.1021/nn7000867

Lee, A.M., Rojek, J.M., Gundersen, A., Stroher, U., Juteau, J.-M., Vaillant, A. and Kunz, S. (2008) Inhibition of cellular entry of lymphocytic choriomeningitis virus by amphipathic DNA polymers. Virology. 372:107-117. http://dx.doi.org/10.1016/j.virol.2007.10.016
http://www.sciencedirect.com/science/article/B6WXR-4R70JXH-4/2/0eac63217023d20d26b12e19da26c0a2

Li, N. and Ho, C.M. (2008) Aptamer-based optical probes with separated molecular recognition and signal transduction modules. J Am Chem Soc. 130:2380-2381. http://dx.doi.org/10.1021/ja076787b
http://pubs.acs.org/cgi-bin/article.cgi/jacsat/2008/130/i08/html/ja076787b.html

Lu, H.-W., Bottausci, F., Fowler, J., Bertozzi, A., Carl Meinhart, C. and Kim, C.-J. (2008) A study of EWOD-driven droplets by PIV investigation. Lab Chip. 8:456-461. http://dx.doi.org/10.1029/b717141b http://www.rsc.org/Publishing/Journals/LC/article.asp?doi=b717141b

Ma, Y., Sun, C.-P., Fields, M., Haake, D., Churchill, B. and Ho, C. (2008) An unsteady microfluidic T-form mixer perturbed by hydrodynamic pressure. J Micromechanics Microengineering. In press.

Ma, Y., Sun, C.P., Fields, M., Li, Y., Haake, D.A., Churchill, B.M. and Ho, C.M. (2008) Microfluidic T-form mixer utilizing in-line pressure disturbances. J Micromechanics Microengineering. In press.

McAbee, R.D., Green, E.N., Holeman, J., Christiansen, J., Frye, N., Dealey, K., Mulligan, F.S., 3rd, Brault, A.C. and Cornel, A.J. (2008) Identification of Culex pipiens complex mosquitoes in a hybrid zone of West Nile Virus transmission in Fresno County, California. Am J Trop Med Hyg. 78:303-310. http://www.ajtmh.org/cgi/content/abstract/78/2/303

Patiris, P., Oceguera, L., Peck, G., Chiles, R., Reisen, B. and CV, H. (2008) Serological diagnosis of West Nile and St. Louis encephalitis virus infections in domestic chickens. Am J Trop Med Hyg. 27:In press.

Reignier, T., Oldenburg, J., Flanagan, M.L., Hamilton, G.A., Martin, V.K. and Cannon, P.M. (2008) Receptor use by the Whitewater Arroyo virus glycoprotein. Virology. 371:439-446. http://dx.doi.org/10.1016/j.virol.2007.10.004

Rojek, J. and Kunz, S. (2008) Cell entry by human pathogenic arenaviruses. Cell Microbiol. http://dx.doi.org/10.1111/j.1462-5822.2007.01113.x
http://www.blackwell-synergy.com/doi/abs/10.1111/j.1462-5822.2007.01113.x

Rojek, J.M., Perez, M. and Kunz, S. (2008) Cellular entry of lymphocytic choriomeningitis virus. J Virol. 82:1505-1517. http://dx.doi.org/10.1128/JVI.01331-07
http://jvi.asm.org/cgi/content/abstract/82/3/1505

Schatz, M.M., Peters, B., Akkad, N., Ullrich, N., Martinez, A.N., Carroll, O., Bulik, S., Rammensee, H.G., van Endert, P., Holzhutter, H.G., Tenzer, S. and Schild, H. (2008) Characterizing the N-terminal processing motif of MHC class I ligands. J Immunol. 180:3210-3217. http://www.jimmunol.org/cgi/content/full/180/5/3210

Wong, P.K. and Ho, C.M. (2008) Emergent diagnostic and therapeutic platforms for nanoengineered medicine. IEEE Nanotechnology Magazine. In press.

 

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